Brian2modelfitting
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Model Fitting
Optimizer
Metric
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Examples
brian2modelfitting package
Brian2modelfitting
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A
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B
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C
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F
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G
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I
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M
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N
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O
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P
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R
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S
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T
A
ask() (brian2modelfitting.optimizer.NevergradOptimizer method)
(brian2modelfitting.optimizer.Optimizer method)
(brian2modelfitting.optimizer.SkoptOptimizer method)
B
best_error (brian2modelfitting.fitter.Fitter attribute)
(brian2modelfitting.fitter.OnlineTraceFitter attribute)
(brian2modelfitting.fitter.SpikeFitter attribute)
(brian2modelfitting.fitter.TraceFitter attribute)
best_params (brian2modelfitting.fitter.Fitter attribute)
(brian2modelfitting.fitter.OnlineTraceFitter attribute)
(brian2modelfitting.fitter.SpikeFitter attribute)
(brian2modelfitting.fitter.TraceFitter attribute)
brian2modelfitting (module)
brian2modelfitting.fitter (module)
brian2modelfitting.metric (module)
brian2modelfitting.optimizer (module)
brian2modelfitting.simulator (module)
brian2modelfitting.tests (module)
brian2modelfitting.utils (module)
C
calc() (brian2modelfitting.metric.FeatureMetric method)
(brian2modelfitting.metric.GammaFactor method)
(brian2modelfitting.metric.MSEMetric method)
(brian2modelfitting.metric.Metric method)
(brian2modelfitting.metric.SpikeMetric method)
(brian2modelfitting.metric.TraceMetric method)
calc_bounds() (in module brian2modelfitting.optimizer)
calc_eFEL() (in module brian2modelfitting.metric)
calc_errors() (brian2modelfitting.fitter.Fitter method)
(brian2modelfitting.fitter.OnlineTraceFitter method)
(brian2modelfitting.fitter.SpikeFitter method)
(brian2modelfitting.fitter.TraceFitter method)
callback_none() (in module brian2modelfitting.utils)
callback_setup() (in module brian2modelfitting.utils)
callback_text() (in module brian2modelfitting.utils)
check_values() (brian2modelfitting.metric.FeatureMetric method)
CPPStandaloneSimulator (class in brian2modelfitting.simulator)
F
feat_to_err() (brian2modelfitting.metric.FeatureMetric method)
FeatureMetric (class in brian2modelfitting.metric)
firing_rate() (in module brian2modelfitting.metric)
fit() (brian2modelfitting.fitter.Fitter method)
(brian2modelfitting.fitter.OnlineTraceFitter method)
(brian2modelfitting.fitter.SpikeFitter method)
(brian2modelfitting.fitter.TraceFitter method)
Fitter (class in brian2modelfitting.fitter)
G
GammaFactor (class in brian2modelfitting.metric)
generate() (brian2modelfitting.fitter.Fitter method)
(brian2modelfitting.fitter.OnlineTraceFitter method)
(brian2modelfitting.fitter.SpikeFitter method)
(brian2modelfitting.fitter.TraceFitter method)
generate_spikes() (brian2modelfitting.fitter.SpikeFitter method)
generate_traces() (brian2modelfitting.fitter.OnlineTraceFitter method)
(brian2modelfitting.fitter.TraceFitter method)
get_dimensions() (brian2modelfitting.metric.FeatureMetric method)
(brian2modelfitting.metric.GammaFactor method)
(brian2modelfitting.metric.MSEMetric method)
(brian2modelfitting.metric.Metric method)
(brian2modelfitting.metric.SpikeMetric method)
(brian2modelfitting.metric.TraceMetric method)
get_errors() (brian2modelfitting.metric.FeatureMetric method)
(brian2modelfitting.metric.GammaFactor method)
(brian2modelfitting.metric.MSEMetric method)
(brian2modelfitting.metric.Metric method)
(brian2modelfitting.metric.SpikeMetric method)
(brian2modelfitting.metric.TraceMetric method)
get_features() (brian2modelfitting.metric.FeatureMetric method)
(brian2modelfitting.metric.GammaFactor method)
(brian2modelfitting.metric.MSEMetric method)
(brian2modelfitting.metric.Metric method)
(brian2modelfitting.metric.SpikeMetric method)
(brian2modelfitting.metric.TraceMetric method)
get_full_namespace() (in module brian2modelfitting.fitter)
get_gamma_factor() (in module brian2modelfitting.metric)
get_normalized_dimensions() (brian2modelfitting.metric.FeatureMetric method)
(brian2modelfitting.metric.GammaFactor method)
(brian2modelfitting.metric.MSEMetric method)
(brian2modelfitting.metric.Metric method)
(brian2modelfitting.metric.SpikeMetric method)
(brian2modelfitting.metric.TraceMetric method)
get_param_dic() (in module brian2modelfitting.fitter)
get_sensitivity_equations() (in module brian2modelfitting.fitter)
get_sensitivity_init() (in module brian2modelfitting.fitter)
get_spikes() (in module brian2modelfitting.fitter)
I
initialize() (brian2modelfitting.optimizer.NevergradOptimizer method)
(brian2modelfitting.optimizer.Optimizer method)
(brian2modelfitting.optimizer.SkoptOptimizer method)
(brian2modelfitting.simulator.CPPStandaloneSimulator method)
(brian2modelfitting.simulator.RuntimeSimulator method)
(brian2modelfitting.simulator.Simulator method)
initialize_neurons() (in module brian2modelfitting.simulator)
initialize_parameter() (in module brian2modelfitting.simulator)
M
make_dic() (in module brian2modelfitting.utils)
Metric (class in brian2modelfitting.metric)
MSEMetric (class in brian2modelfitting.metric)
N
neurons (brian2modelfitting.simulator.CPPStandaloneSimulator attribute)
(brian2modelfitting.simulator.RuntimeSimulator attribute)
(brian2modelfitting.simulator.Simulator attribute)
NevergradOptimizer (class in brian2modelfitting.optimizer)
normalize_weights() (in module brian2modelfitting.metric)
O
OnlineTraceFitter (class in brian2modelfitting.fitter)
optimization_iter() (brian2modelfitting.fitter.Fitter method)
(brian2modelfitting.fitter.OnlineTraceFitter method)
(brian2modelfitting.fitter.SpikeFitter method)
(brian2modelfitting.fitter.TraceFitter method)
Optimizer (class in brian2modelfitting.optimizer)
P
ProgressBar (class in brian2modelfitting.utils)
R
recommend() (brian2modelfitting.optimizer.NevergradOptimizer method)
(brian2modelfitting.optimizer.Optimizer method)
(brian2modelfitting.optimizer.SkoptOptimizer method)
refine() (brian2modelfitting.fitter.TraceFitter method)
results() (brian2modelfitting.fitter.Fitter method)
(brian2modelfitting.fitter.OnlineTraceFitter method)
(brian2modelfitting.fitter.SpikeFitter method)
(brian2modelfitting.fitter.TraceFitter method)
run() (brian2modelfitting.simulator.CPPStandaloneSimulator method)
(brian2modelfitting.simulator.RuntimeSimulator method)
(brian2modelfitting.simulator.Simulator method)
(in module brian2modelfitting.tests)
run_again() (in module brian2modelfitting.simulator)
RuntimeSimulator (class in brian2modelfitting.simulator)
S
set_parameter_value() (in module brian2modelfitting.simulator)
set_states() (in module brian2modelfitting.simulator)
setup_fit() (in module brian2modelfitting.fitter)
setup_neuron_group() (brian2modelfitting.fitter.Fitter method)
(brian2modelfitting.fitter.OnlineTraceFitter method)
(brian2modelfitting.fitter.SpikeFitter method)
(brian2modelfitting.fitter.TraceFitter method)
setup_simulator() (brian2modelfitting.fitter.Fitter method)
(brian2modelfitting.fitter.OnlineTraceFitter method)
(brian2modelfitting.fitter.SpikeFitter method)
(brian2modelfitting.fitter.TraceFitter method)
Simulator (class in brian2modelfitting.simulator)
SkoptOptimizer (class in brian2modelfitting.optimizer)
SpikeFitter (class in brian2modelfitting.fitter)
SpikeMetric (class in brian2modelfitting.metric)
spikemonitor (brian2modelfitting.simulator.CPPStandaloneSimulator attribute)
(brian2modelfitting.simulator.RuntimeSimulator attribute)
(brian2modelfitting.simulator.Simulator attribute)
statemonitor (brian2modelfitting.simulator.CPPStandaloneSimulator attribute)
(brian2modelfitting.simulator.RuntimeSimulator attribute)
(brian2modelfitting.simulator.Simulator attribute)
T
tell() (brian2modelfitting.optimizer.NevergradOptimizer method)
(brian2modelfitting.optimizer.Optimizer method)
(brian2modelfitting.optimizer.SkoptOptimizer method)
TraceFitter (class in brian2modelfitting.fitter)
TraceMetric (class in brian2modelfitting.metric)
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