Introduction

The brian2modelfitting toolbox provides three optimization classes:

• TraceFitter
• SpikeFitter
• OnlineTraceFitter

The classes expect a model and data as an input and returns the best fit of parameters and the corresponding error. The toolbox can optimize over multiple traces (e.g. input currents) at the same time.

In following documentation we assume that brian2modelfitting has been imported like this:

from brian2modelfitting import *

Installation

To install Model Fitting alongside Brian2 you can use pip, by using a pip utility:

pip install brian2modelfitting

Testing Model Fitting

Version on master branch gets automatically tested with Travis services. To test the code yourself, you will need to have pytest installed and run the command:

pytest